Interactive Visualization of Metabolic Pathways
نویسندگان
چکیده
This work enriches the visualization of complex graphs from the biomedical domain called metabolic pathways by means of interactive linked views in 2D and 3D. Due to the high degree of complexity of pathways biologists are restrained by currently available systems in the process of hypothesis generation and validation. We propose an interactive visual data mining process that is supported by the integration of methods as detail-ondemand, focus and context, and semantic zoom. CR
منابع مشابه
Guiding the interactive exploration of metabolic pathway interconnections
Approaches to investigate biological processes have been of strong interest in the past few years and are the focus of several research areas, especially Systems Biology. Biochemical networks as representations of processes are very important for a comprehensive understanding of living beings. Drawings of these networks are often visually overloaded and do not scale. A common solution to deal w...
متن کاملIntegrative study of Arabidopsis thaliana metabolomic and transcriptomic data with the interactive MarVis-Graph software
State of the art high-throughput technologies allow comprehensive experimental studies of organism metabolism and induce the need for a convenient presentation of large heterogeneous datasets. Especially, the combined analysis and visualization of data from different high-throughput technologies remains a key challenge in bioinformatics. We present here the MarVis-Graph software for integrative...
متن کاملMetPA: a web-based metabolomics tool for pathway analysis and visualization
UNLABELLED MetPA (Metabolomics Pathway Analysis) is a user-friendly, web-based tool dedicated to the analysis and visualization of metabolomic data within the biological context of metabolic pathways. MetPA combines several advanced pathway enrichment analysis procedures along with the analysis of pathway topological characteristics to help identify the most relevant metabolic pathways involved...
متن کاملFBA-SimVis: interactive visualization of constraint-based metabolic models
UNLABELLED FBA-SimVis is a VANTED plug-in for the constraint-based analysis of metabolic models with special focus on the visual exploration of metabolic flux data resulting from model analysis. The program provides a user-friendly environment for model reconstruction, constraint-based model analysis, and interactive visualization of the simulation results. With the ability to quantitatively an...
متن کاملPathCase: pathways database system
MOTIVATION As the blueprints of cellular actions, biological pathways characterize the roles of genomic entities in various cellular mechanisms, and as such, their availability, manipulation and queriability over the web is important to facilitate ongoing biological research. RESULTS In this article, we present the new features of PathCase, a system to store, query, visualize and analyze meta...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2007